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A new Diamond version 5.0.2 is available with two bug fixes for the "online update" function as well as for the registration of "diamdoc" files. More... October 25, 2023 Today, the long awaited new version 5 of our software package Diamond has been released. More... April 28, 2023
- Function List
Diamond Function List This list contains all functions...
- Features
Diamond Features. The following gives you an overview of the...
- Brochure (PDF)
Tel: +49 (2 28) 981 36 43 Fax: GbR +49 (2 28) 981 36 44...
- References
Diamond References. Citation of Diamond. You are permitted...
- Gallery
Convex cavities in spinel structure. In the spinel-type...
- User Group
Diamond User Group The Diamond user group was a...
- Function List
Feb 1, 2010 · DIAMOND v2.1.2. The iterated search mode (option --iterate) now uses a linear-time feature as the first search round. Added the linclust command to cluster using only a single linear-time search round. Fixed compiler errors on macOS. Fixed a bug that caused invalid alignment traceback output for the DAA view workflow.
Textual copy of datasets via Windows clipboard for post-processing. Construction: Filling of unit cell, multiple cells, any cell range, or boxes or spheres around selected central atoms. Filling of user-defined rectangular areas within the screen. Selection of atoms to construct sublattices.
- Introduction
- Documentation
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- About
DIAMOND is a sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data. The key features are:
•Pairwise alignment of proteins and translated DNA at 100x-10,000x speed of BLAST.
•Protein clustering of up to tens of billions of proteins
•Frameshift alignments for long read analysis.
•Low resource requirements and suitable for running on standard desktops or laptops.
•Various output formats, including BLAST pairwise, tabular and XML, as well as taxonomic classification.
The online documentation is located at the GitHub Wiki.
Diamond is actively supported and developed software. Please use the issue tracker for malfunctions and the GitHub discussions for questions, comments, feature requests, etc.
Since 2019, DIAMOND is developed by Benjamin Buchfink at the Drost lab, Max Planck Institute for Biology Tübingen. From 2018-2019, its development was supported by the German Federal Ministry for Economic Affairs and Energy through an EXIST grant. From 2016-2018, it was developed by Benjamin Buchfink as an independent researcher. From 2013-2015, the initial version was developed by Benjamin Buchfink at the Huson lab, University of Tübingen, Germany.
[📧Email] [Twitter] [Google Scholar] [Drost lab] [MPI-BIO]
When using the tool in published research, please cite:
•Buchfink B, Reuter K, Drost HG, "Sensitive protein alignments at tree-of-life scale using DIAMOND", Nature Methods 18, 366–368 (2021). doi:10.1038/s41592-021-01101-x
For sequence clustering:
•Buchfink B, Ashkenazy H, Reuter K, Kennedy JA, Drost HG, "Sensitive clustering of protein sequences at tree-of-life scale using DIAMOND DeepClust", bioRxiv 2023.01.24.525373; doi: https://doi.org/10.1101/2023.01.24.525373
Download Diamond Version 5.0.2. Diamond version 5 is distributed as a self-extracting executable file (*-Setup.exe). It is provided with online-help, a user manual, a tutorial, a small structure type database as well as several sample files. A special version of the Crystallography Open Database (COD), dated April 2021, is available separately ...
Variable zoom factor (enhances "Page view" mode of Diamond 2). Models, assigned globally or individually to single or groups of atoms (allows mixing of different models in one and the same picture): Ball-and-stick (regular), ellipsoid, space-filling,
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Feb 1, 2010 · bioconda / packages / diamond 2.1.10. 7 Accelerated BLAST compatible local sequence aligner. Conda Files; Labels; Badges; License: GPL-3.0-or-later ...
