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Patric
Spanish footballerSTASUBGYRPSeason 202323226025BV-BRC is a comprehensive database and analysis platform for bacterial and viral genomes and their hosts. It integrates data and tools from PATRIC, IRD and ViPR, and provides various ways to access and manage data.
Jan 1, 2014 · The Pathosystems Resource Integration Center (PATRIC) is the all-bacterial Bioinformatics Resource Center (BRC) (http://www.patricbrc.org). A joint effort by two of the original National Institute of Allergy and Infectious Diseases-funded BRCs, PATRIC provides researchers with an online resource that stores and integrates a variety of data ...
- Alice R. Wattam, David Abraham, Oral Dalay, Terry Disz, Timothy Driscoll, Joseph L. Gabbard, Joseph ...
- 10.1093/nar/gkt1099
- 2014
- 2014/01/01
Specifically, PATRIC provides scientists with (i) a comprehensive bacterial genomics database, (ii) a plethora of associated data relevant to genomic analysis, and (iii) an extensive suite of computational tools and platforms for bioinformatics analysis.
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Jan 31, 2017 · PATRIC is a database and analysis tool for bacterial infectious diseases, integrating pathogen information with rich data and analysis tools. It covers major species such as E. coli, M. tuberculosis, and B. fibrosa, and provides publications and contact information.
- Data Growth and Enhancements
- Services
- Web-Based Analysis Tools
- Command-Line Interface
One of the most dramatic changes in supporting bioinformatic work since the beginning of the BRC program has been the exponential growth in publicly available microbial genome sequences (Figure 1). The collection of private user genome sequences that have been annotated and indexed by PATRIC has also grown since the establishment of the workspace e...
The services provided by PATRIC are designed to enable easy access to complex bioinformatic workflows. They can be accessed via the PATRIC web interface and CLI. Most services have the capacity to handle hundreds or even thousands of jobs per day. Jobs are typically run on a series of internal servers, with surge capacity being handled by a large c...
The PATRIC website offers several interactive visual analytic tools that enable users to compare omics datasets. These tools integrate data of various types, perform some computational tasks and render interactive visualizations for the user. PATRIC currently supports many web-based analysis tools, such as the Heat Map Viewer for comparing shared p...
For the past 5 years, the PATRIC data store has been managed using a NoSQL Apache Solr database structure. To accommodate the rapidly growing data collection and to take advantages scalability and resilience, the PATRIC database architecture was converted to an Apache SolrCloud database architecture in the spring of 2019. The SolrCloud database is ...
- James J. Davis, James J. Davis, Alice R. Wattam, Alice R. Wattam, Ramy K. Aziz, Thomas S. Brettin, T...
- 2019
PATRIC is a platform for bacterial research and analysis, integrating pathogen information and data from various sources. It is free to access with registration and developed by MSKCC.
Aug 16, 2022 · PATRIC, a bacterial bioinformatics resource center, is merging with IRD/ViPR, a viral bioinformatics resource center, to form BV-BRC. Learn about the new features, data, tools, and services in BV-BRC and the transition timeline and help options.
