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- BLAST+ consists of a number of command-line applications for sequence database search, filtering and comparing tools, creating blast databases and masking low complexity sequence.
docs.hpc.qmul.ac.uk/apps/bio/blast/
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Dec 15, 2009 · The BLAST+ applications have a number of new features. A GI or accession may be used as the query, with the actual sequence automatically retrieved from a BLAST database (the sequence must be available in a BLAST database) or from GenBank.
- Christiam Camacho, George Coulouris, Vahram Avagyan, Ning Ma, Jason S. Papadopoulos, Kevin Bealer, T...
- 2009
Jun 23, 2008 · The BLAST+ applications include a new set of sequence filtering applications, namely segmasker, dustmasker, and windowmasker. Segmasker is an application that identifies and masks low complexity regions of protein sequences.
- Tom Madden, Christiam Camacho
- 2021/03/14
Dec 15, 2009 · The new BLAST command-line applications, compared to the current BLAST tools, demonstrate substantial speed improvements for long queries as well as chromosome length database sequences. We have also improved the user interface of the command-line applications.
- Christiam Camacho, George Coulouris, Vahram Avagyan, Ning Ma, Jason S. Papadopoulos, Kevin Bealer, T...
- 2009
Jun 23, 2008 · The BLAST+ applications are distributed both as an executable and as source code. For the executable formats we provide installers as well as tarballs; the source code is only provided as a tarball. These are freely available at ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/.
- 2024/05/16
The NCBI provides a suite of command-line tools to run BLAST called BLAST+. This allows users to perform BLAST searches on their own server without size, volume and database restrictions. BLAST+ can be used with a command line so it can be integrated directly into your workflow.
Dec 10, 2018 · Key Points. The BLAST+ package offers three categories of applications: 1.) search tools, 2.) BLAST database tools, and 3.) sequence filtering tools. The blastn, blastp, blastx, tblastx, tblastn, psiblast, rpsblast, and rpstblastn are considered search applications, as they execute a BLAST search.
Feb 2, 2024 · The BLAST+ applications include a new set of sequence filtering applications, namely segmasker, dustmasker, and windowmasker. segmasker is an application that identifies and masks low complexity regions of protein sequences.
