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BV-BRC is an information system that combines data and tools from PATRIC, IRD and ViPR, the Legacy BRC resources for bacterial and viral infectious diseases. Users can search, analyze, manage and share data on genomes, proteins, genes and more.
- Data and Functionality Overview (for PATRIC Users) | BV-BRC
BV-BRC has been developed by starting with the legacy PATRIC...
- New PATRIC Video Tutorial Series | BV-BRC
Published on 2020-07-01 00:00:00. We have released a series...
- Data and Functionality Overview (for PATRIC Users) | BV-BRC
Jan 1, 2014 · PATRIC provides a variety of ways for researchers to find data of interest and a private workspace where they can store both genomic and gene associations, and their own private data. Both private and public data can be analyzed together using a suite of tools to perform comparative genomic or transcriptomic analysis.
- Alice R. Wattam, David Abraham, Oral Dalay, Terry Disz, Timothy Driscoll, Joseph L. Gabbard, Joseph ...
- 10.1093/nar/gkt1099
- 2014
- 2014/01/01
Jan 31, 2017 · PATRIC is a database and analysis tool for bacterial infectious diseases, integrating pathogen information with rich data and analysis tools. It covers major species such as E. coli, M. tuberculosis, and B. fibrosa, and provides publications and contact information.
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What is Pat R eSource I ntegration C enter (Patric)?
Funded by the National Institute of Allergy and Infectious Diseases, the Pat hosystems R esource I ntegration C enter (PATRIC) is a genomics-centric relational database and bioinformatics resource designed to assist scientists in infectious-disease research.
- Data Growth and Enhancements
- Services
- Web-Based Analysis Tools
- Command-Line Interface
One of the most dramatic changes in supporting bioinformatic work since the beginning of the BRC program has been the exponential growth in publicly available microbial genome sequences (Figure 1). The collection of private user genome sequences that have been annotated and indexed by PATRIC has also grown since the establishment of the workspace e...
The services provided by PATRIC are designed to enable easy access to complex bioinformatic workflows. They can be accessed via the PATRIC web interface and CLI. Most services have the capacity to handle hundreds or even thousands of jobs per day. Jobs are typically run on a series of internal servers, with surge capacity being handled by a large c...
The PATRIC website offers several interactive visual analytic tools that enable users to compare omics datasets. These tools integrate data of various types, perform some computational tasks and render interactive visualizations for the user. PATRIC currently supports many web-based analysis tools, such as the Heat Map Viewer for comparing shared p...
For the past 5 years, the PATRIC data store has been managed using a NoSQL Apache Solr database structure. To accommodate the rapidly growing data collection and to take advantages scalability and resilience, the PATRIC database architecture was converted to an Apache SolrCloud database architecture in the spring of 2019. The SolrCloud database is ...
- James J. Davis, James J. Davis, Alice R. Wattam, Alice R. Wattam, Ramy K. Aziz, Thomas S. Brettin, T...
- 2019
